Do you want to encapsulate it or just fill voids?
It sounds like you’re filling voids so:
Plane the not-show side. Apply tuck form tape or tyvek tape liberally to planed side.
If your cracks go through to the side like in the first picture, tape the side of the crack, this may require some hand work to make the sides flat enough for tape to adhere and create a barrier.
Optional: Get a sheet of melamine and place tape side of cookie on melamine. Hot glue or silicone caulk cookie to melamine base form. This is so that if there are any leaks through the bottom tape, they dont get all over your bench.
Fill voids with epoxy up to thickness prescribed by your epoxy. Do not use normal epoxy and try to fill a massive void like those side cracks. It will overheat, change color, possible spall or not adhere. You can buy thick-set epoxies upto 2" commonly and a few upto 6", but most epoxies are no more than 1/4" thickness.
You can do multiple layers of epoxy after the kick time has passed (check manufacturers recommendation for timing second pour on top of previous pour.)
Wait at least as long as the manufacturer recommends to open the mold after final pour. This may be up to 14 days depending on the resin. Be aware that most curing resins puts off fumes that are… unpleasant… ie, don’t let it cure on your dining room table unless you’re staying in a hotel down the road. Also put a light cloth covering over it to keep dust off.
Pop the mold, remove all the tape, flatten the top (and bottom if you had a leak). May need touchup pours for bubbles/ voids that are exposed after planing. Use a thin / quick set epoxy of the same type as your deep pour to fix these. Re flatten again, sand to ridiculously high grit (micro-scratches will show in the epoxy just like on your phone case), finish.
Theres a million recommendations for finishes out there. High end finishes have a ceramic protective coating, but can be as simple as arm-r-seal.
A few youtube helps:
https://www.youtube.com/watch?v=OOrSIKFMGrY (these guys make some of the most high-end epoxy products)